|
|
|
 |
M@LIMS V1.33 | | Description: Micro@rray Laboratory Information Management System | | Comment: M@LIMS is a new application dedicated to Home-Made microarray experiments, based on the standard annotation MIAME --Minimum Information About a Microarray Experiment-- developed by The MGED Society --Microarray Gene Expression Data Society--. M@LIMS stores and manages microarray data and provides raw expression data for further treatment by other modules. | | Credits: 11/04/2005 - Antony Le Bechec |
|
 M@D file |
|
 |
MINIM@LIMS V0.9 | | Description: MINI Micro@rray Laboratory Information Management System | | Comment: MINIM@LIMS is a external microarray data submission tool that allows the storage of Commercial microarray data. MINIM@LIMS is MIAME compliant and manages raw expression data for further treatment by other modules. | | Credits: 11/04/2005 - Antony Le Bechec |
|
M@D file |
|
|
 |
FILTR@ V1.5 | | Description: Micro@rray Filtering | | Comment: Allow the filtering of microarray data, using packages of Bioconductor --siggenes, mergemaid, impute--. M@FILTER proposes to use some algoritms to filter a Gene Expression Matrix --Missing Values, Impute Missing Values, Merge Replicates, Flat Patterns and Outliers Detection--. M@FILTER provides Filtered Gene Expression Matrix that can be analysed with other modules. | | Credits: 18/05/2005 - Jeremy Moguet, Anthony Le Bechec |
|
M@D file |
|
 |
NORM@ V1.1 | | Description: Micro@rray Normalisation | | Comment: Allow the normalisation of microarray data, using packages of Bioconductor. M@NOR proposes Location Normalisation --Global Loess/Intensity Dependent, 2D Spatial Normalization, Median Normalization algorithms-- and Scale Normalisation --on Arrays and/or in Blocks--. M@NOR provides a Gene Expression Matrix which can then be filtered and analysed with other modules. | | Credits: 20/06/2005 - Jeremy Moguet, Antony Le Bechec, Gaby Badlou, |
|
M@D file |
|
|
 |
CLUST@R V1.1 | | Description: Micro@rray CLUSTering | | Comment: Allow the clustering of microarray data, using packages of Bioconductor on the R environment. M@CLUSTER proposes to use hierarchical clustering --Ward, Complete, Average and Sigle with Correlation and Euclidian Distance-- and Partitional Clustering --PAM, CLARA, FANNY and KMEAN with Correaltion and Euclidian Distance--. M@CLUSTER provides a graphical visualisation --Dendrograms and Graphs-- and generates Gene List for further biological interpretation with other modules. | | Credits: 22/07/2005 - Jeremy Moguet, Anthony Le Bechec |
|
M@D file |
|
 |
S@M V1.2 | | Description: Statistical @nalysis for Microarray | | Comment: Allow the analysis of microarray data, using packages siggenes of Bioconductor. M@MASAM proposes to run the SAM --Significance Analysis of Microarrays-- algorithm on a Gene Expression Matrix, according to a delta parameter. M@MASAM provides a graphical visualization of results and a Gene List which can then be biologically interpreted with other modules. | | Credits: 02/10/2006 - Antony Le Bechec, Jeremy Moguet |
|
M@D file |
|
|
 |
M@NGA V1.2 | | Description: Micro@rray Nice Gene Annotator | | Comment: M@NGA allows the Gene List annotation and convertion --Gene Ontology, KEGG and identifier such as EntrezGene/LocusLink, Genbank, Unigene and so on--. M@NGA use a pipeline to the Stanford tool SOURCE and the CNIO tool GeneIDConverter to annotate a Gene List from a file or another module Memorized Gene List which can be used with other modules. | | Credits: 25/07/2005 - Antony Le Bechec |
|
M@D file |
|
 |
K@SSANDRA V1.2 | | Description: Knowledge and @nnotation Sources Statistical Analysis using iNteractions and Distance gR@phs | | Comment: K@SSANDRA integrates Knowledge Annotation data --Gene Ontology, KEGG Pathway, Transcription Factors, Protiens Binding and miRNA Interactions-- from a Expressed Gene List. K@SSANDRA proposes Statistical Analysis of annotations and is directly connected to online databases --Amigo, KEGG, miRBase-- to provides interaction graphs which allow biological interpretations. | | Credits: 06/11/2006 - Antony Le Bechec |
|
M@D file |
|
|
 |
M@GIE V1.1 | | Description: Micro@rray Gene Information Exploration | | Comment: M@GIE manages Gene List from a tab-delimiter file or from a Memorized Gene List provided by another module. Memorized Gene List with M@GIE can be used with other modules. | | Credits: 04/08/2006 - Antony Le Bechec |
|
M@D file |
|
 |
M@XIE V1.0 | | Description: Micro@rray Matrix Information Exploration | | Comment: M@XIE manages Gene Expression Matrix from a tab-delimiter file or from a Memorized Matrix provided by another module. Memorized Matrix with M@XIE can be used with other modules. | | Credits: 31/01/2006 - Antony Le Bechec |
|
M@D file |
|
|
